Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF25-30LB
Accession NumberQRUD00000000.1
Gene Summary
Adenine Count
1558347 bp
Thymine Count
1558364 bp
Guanine Count
1138401 bp
Cytosine Count
1152170 bp
Genome Length
5408603 bp
Protein-coding Genes
4536 genes
Non-Coding Genes
107 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| altronate dehydratase | DWY53_00225 | Not Available | + | 58719 - 60206 | 54417.9 |
| glycoside hydrolase family 2 protein | DWY53_00230 | Not Available | + | 60327 - 62882 | 95908.0 |
| duf4982 domain-containing protein | DWY53_00235 | Not Available | + | 62921 - 65476 | 97703.9 |
| 16s ribosomal rna | Not Available | Not Available | + | 62938 - 64471 | Not Available |
| 23s ribosomal rna | Not Available | Not Available | + | 64893 - 67785 | Not Available |
| glycosyl hydrolase | DWY53_00240 | Not Available | + | 65485 - 66693 | 45574.7 |
| beta-agarase | DWY53_00245 | Not Available | + | 66720 - 67670 | 36275.4 |
| response regulator | DWY53_00250 | Not Available | + | 67851 - 70178 | 89085.0 |
| 5s ribosomal rna | Not Available | Not Available | + | 67864 - 67974 | Not Available |
| sigma-54-dependent fis family transcriptional regulator | DWY53_00255 | Not Available | + | 70159 - 71442 | 48023.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
