Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF25-30LB |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1558347 bp
Thymine Count
1558364 bp
Guanine Count
1138401 bp
Cytosine Count
1152170 bp
Genome Length
5408603 bp
Protein-coding Genes
4536 genes
Non-Coding Genes
107 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rna-binding transcriptional accessory protein | DWY53_04390 | Not Available | Negative | 1115226 - 1117355 | 79654.4 |
| duf1016 family protein | DWY53_04395 | Not Available | Positive | 1117709 - 1118524 | 31547.8 |
| abi family protein | DWY53_04400 | Not Available | Negative | 1118840 - 1119802 | 37634.4 |
| hypothetical protein | DWY53_04415 | Not Available | Negative | 1120767 - 1120991 | 8565.94 |
| glycoside hydrolase family 2 | DWY53_04420 | Not Available | Positive | 1121066 - 1123690 | 98288.4 |
| response regulator | DWY53_04425 | Not Available | Positive | 1123816 - 1128219 | 168921.0 |
| sugar phosphate isomerase/epimerase | DWY53_04430 | Not Available | Positive | 1128385 - 1129269 | 33290.8 |
| tonb-dependent receptor | DWY53_04435 | Not Available | Positive | 1129299 - 1132754 | 126263.0 |
| ragb/susd family nutrient uptake outer membrane protein | DWY53_04440 | Not Available | Positive | 1132775 - 1134784 | 75993.3 |
| polysaccharide lyase | DWY53_04445 | Not Available | Positive | 1134939 - 1136672 | 64367.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

