Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF25-30LB |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1558347 bp
Thymine Count
1558364 bp
Guanine Count
1138401 bp
Cytosine Count
1152170 bp
Genome Length
5408603 bp
Protein-coding Genes
4536 genes
Non-Coding Genes
107 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 3'-5' exonuclease | DWY53_04340 | Not Available | Negative | 1103950 - 1104726 | 29605.2 |
| dna polymerase iii subunit beta | DWY53_04345 | Not Available | Negative | 1104778 - 1105902 | 41323.5 |
| duf3127 domain-containing protein | DWY53_04350 | Not Available | Positive | 1106056 - 1106433 | 13929.4 |
| duf4270 domain-containing protein | DWY53_04355 | Not Available | Negative | 1106682 - 1108112 | 53592.3 |
| glycogen synthase | DWY53_04360 | Not Available | Negative | 1108132 - 1108956 | 31933.0 |
| pantoate--beta-alanine ligase | DWY53_04365 | Not Available | Positive | 1109308 - 1110156 | 31339.6 |
| aspartate 1-decarboxylase | DWY53_04370 | Not Available | Positive | 1110178 - 1110528 | 12822.7 |
| fructose-bisphosphatase class iii | DWY53_04375 | Not Available | Negative | 1110658 - 1112658 | 76532.4 |
| putative transporter | DWY53_04380 | Not Available | Negative | 1112668 - 1114329 | 59396.9 |
| nad(+) diphosphatase | DWY53_04385 | Not Available | Negative | 1114406 - 1115203 | 30147.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

