Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF25-30LB |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1558347 bp
Thymine Count
1558364 bp
Guanine Count
1138401 bp
Cytosine Count
1152170 bp
Genome Length
5408603 bp
Protein-coding Genes
4536 genes
Non-Coding Genes
107 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf4099 domain-containing protein | DWY53_04285 | Not Available | Positive | 1085842 - 1087437 | 60751.9 |
| type ia dna topoisomerase | DWY53_04290 | Not Available | Positive | 1087498 - 1089588 | 77627.1 |
| duf1896 domain-containing protein | DWY53_04295 | Not Available | Positive | 1089752 - 1090204 | 17250.0 |
| Trna-cys | Not Available | Not Available | Positive | 1094006 - 1094080 | Not Available |
| ferrous iron transport protein b | DWY53_04310 | Not Available | Negative | 1094393 - 1096861 | 92758.5 |
| trna lysidine(34) synthetase tils | DWY53_04315 | Not Available | Positive | 1096982 - 1098286 | 50064.5 |
| tetratricopeptide repeat protein | DWY53_04320 | Not Available | Negative | 1098425 - 1100125 | 62540.1 |
| 23s rrna (guanosine(2251)-2'-o)-methyltransferase rlmb | DWY53_04325 | Not Available | Negative | 1100162 - 1100929 | 28167.3 |
| dna repair protein recn | DWY53_04330 | Not Available | Negative | 1100980 - 1102641 | 62006.0 |
| bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase coabc | DWY53_04335 | Not Available | Negative | 1102757 - 1103953 | 43166.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

