Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF25-30LB |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1558347 bp
Thymine Count
1558364 bp
Guanine Count
1138401 bp
Cytosine Count
1152170 bp
Genome Length
5408603 bp
Protein-coding Genes
4536 genes
Non-Coding Genes
107 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycosyl hydrolase family 109 protein 2 | DWY53_04180 | Not Available | Negative | 1060098 - 1061339 | 47387.7 |
| glycosidase | DWY53_04185 | Not Available | Negative | 1061798 - 1062799 | 37625.8 |
| mfs transporter | DWY53_04190 | Not Available | Negative | 1062832 - 1064130 | 47974.8 |
| glycoside hydrolase family 97 protein | DWY53_04195 | Not Available | Negative | 1064254 - 1066269 | 75845.2 |
| endonuclease | DWY53_04200 | Not Available | Negative | 1066457 - 1067302 | 31946.9 |
| susd/ragb family nutrient-binding outer membrane lipoprotein | DWY53_04205 | Not Available | Negative | 1067346 - 1069115 | 66868.9 |
| susc/raga family tonb-linked outer membrane protein | DWY53_04210 | Not Available | Negative | 1069139 - 1072540 | 124973.0 |
| glycoside hydrolase family 92 protein | DWY53_04220 | Not Available | Negative | 1072829 - 1075141 | 87838.7 |
| glycoside hydrolase family 92 protein | DWY53_04225 | Not Available | Negative | 1075171 - 1077453 | 86472.6 |
| duf4974 domain-containing protein | DWY53_04230 | Not Available | Negative | 1077471 - 1078463 | 38023.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

