Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF25-30LB |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1558347 bp
Thymine Count
1558364 bp
Guanine Count
1138401 bp
Cytosine Count
1152170 bp
Genome Length
5408603 bp
Protein-coding Genes
4536 genes
Non-Coding Genes
107 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| right-handed parallel beta-helix repeat-containing protein | DWY53_04125 | Not Available | Negative | 1039978 - 1041492 | 55846.1 |
| ragb/susd family nutrient uptake outer membrane protein | DWY53_04130 | Not Available | Negative | 1041661 - 1043280 | 59922.3 |
| tonb-dependent receptor | DWY53_04135 | Not Available | Negative | 1043292 - 1046363 | 114432.0 |
| response regulator | DWY53_04140 | Not Available | Negative | 1046504 - 1050664 | 157861.0 |
| arac family transcriptional regulator | DWY53_04145 | Not Available | Positive | 1050813 - 1051733 | 35143.8 |
| lytic transglycosylase domain-containing protein | DWY53_04150 | Not Available | Positive | 1051741 - 1052739 | 37375.8 |
| ion transporter | DWY53_04155 | Not Available | Negative | 1052765 - 1053622 | 32709.8 |
| duf4981 domain-containing protein | DWY53_04160 | Not Available | Positive | 1053738 - 1056833 | 117529.0 |
| winged helix-turn-helix transcriptional regulator | DWY53_04165 | Not Available | Positive | 1057413 - 1058885 | 56378.3 |
| very short patch repair endonuclease | DWY53_04170 | Not Available | Positive | 1058905 - 1059444 | 21617.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

