Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF25-30LB |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1558347 bp
Thymine Count
1558364 bp
Guanine Count
1138401 bp
Cytosine Count
1152170 bp
Genome Length
5408603 bp
Protein-coding Genes
4536 genes
Non-Coding Genes
107 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aminotransferase class iii-fold pyridoxal phosphate-dependent enzyme | DWY53_04075 | Not Available | Negative | 1029601 - 1030725 | 40922.8 |
| n-acetyl-gamma-glutamyl-phosphate reductase | DWY53_04080 | Not Available | Negative | 1030739 - 1031707 | 35956.4 |
| argininosuccinate synthase | DWY53_04085 | Not Available | Negative | 1031713 - 1032921 | 45126.7 |
| n-acetyltransferase | DWY53_04090 | Not Available | Negative | 1033022 - 1033579 | 20661.0 |
| arginine repressor | DWY53_04095 | Not Available | Negative | 1033602 - 1034078 | 17529.3 |
| rhamnulokinase | DWY53_04100 | Not Available | Positive | 1034385 - 1035863 | 55045.9 |
| l-rhamnose isomerase | DWY53_04105 | Not Available | Positive | 1035903 - 1037159 | 47536.4 |
| l-rhamnose/proton symporter rhat | DWY53_04110 | Not Available | Positive | 1037252 - 1038271 | 36101.1 |
| rhamnulose-1-phosphate aldolase | DWY53_04115 | Not Available | Positive | 1038357 - 1039166 | 30243.6 |
| duf4251 domain-containing protein | DWY53_04120 | Not Available | Positive | 1039375 - 1039872 | 18510.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

