Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF25-30LB |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1558347 bp
Thymine Count
1558364 bp
Guanine Count
1138401 bp
Cytosine Count
1152170 bp
Genome Length
5408603 bp
Protein-coding Genes
4536 genes
Non-Coding Genes
107 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| mate family efflux transporter | DWY53_03865 | Not Available | Positive | 962453 - 963805 | 49414.7 |
| potassium/proton antiporter | DWY53_03870 | Not Available | Positive | 963802 - 965250 | 52867.7 |
| divalent metal cation transporter | DWY53_03875 | Not Available | Negative | 965327 - 966580 | 45790.1 |
| hypothetical protein | DWY53_03880 | Not Available | Positive | 966683 - 967081 | 15058.6 |
| hypothetical protein | DWY53_03890 | Not Available | Negative | 968338 - 968733 | 15100.5 |
| rna polymerase sigma factor rpod/siga | DWY53_03895 | Not Available | Negative | 968955 - 969815 | 32805.3 |
| do family serine endopeptidase | DWY53_03900 | Not Available | Negative | 970055 - 971578 | 53839.6 |
| duf417 domain-containing protein | DWY53_03905 | Not Available | Negative | 971900 - 972490 | 21267.4 |
| helix-turn-helix domain-containing protein | DWY53_03910 | Not Available | Negative | 972583 - 973419 | 32696.4 |
| response regulator | DWY53_03915 | Not Available | Positive | 973748 - 976885 | 119488.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

