Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF25-30LB |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1558347 bp
Thymine Count
1558364 bp
Guanine Count
1138401 bp
Cytosine Count
1152170 bp
Genome Length
5408603 bp
Protein-coding Genes
4536 genes
Non-Coding Genes
107 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ferritin | DWY53_03815 | Not Available | Negative | 946665 - 947147 | 17905.2 |
| 30s ribosomal protein s16 | DWY53_03820 | Not Available | Positive | 947354 - 947905 | 19788.4 |
| rpn family recombination-promoting nuclease/putative transposase | DWY53_03825 | Not Available | Negative | 947980 - 948837 | 33170.7 |
| duf5017 domain-containing protein | DWY53_03830 | Not Available | Negative | 949235 - 951127 | 69741.6 |
| tonb-dependent receptor | DWY53_03835 | Not Available | Negative | 951149 - 953746 | 95800.9 |
| tonb-dependent receptor | DWY53_03840 | Not Available | Negative | 954221 - 957562 | 123040.0 |
| energy-dependent translational throttle protein etta | DWY53_03845 | Not Available | Negative | 957932 - 959620 | 63671.1 |
| mfs transporter | DWY53_03850 | Not Available | Negative | 959658 - 960824 | 43903.9 |
| 3-methyl-2-oxobutanoate hydroxymethyltransferase | DWY53_03855 | Not Available | Negative | 960839 - 961660 | 29580.9 |
| had family hydrolase | DWY53_03860 | Not Available | Negative | 961713 - 962363 | 24626.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

