Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF25-30LB |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1558347 bp
Thymine Count
1558364 bp
Guanine Count
1138401 bp
Cytosine Count
1152170 bp
Genome Length
5408603 bp
Protein-coding Genes
4536 genes
Non-Coding Genes
107 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf340 domain-containing protein | DWY53_03300 | Not Available | Positive | 828050 - 828328 | 10143.0 |
| lysine exporter lyso family protein | DWY53_03305 | Not Available | Positive | 828325 - 828945 | 22330.3 |
| mfs transporter | DWY53_03310 | Not Available | Negative | 829008 - 830669 | 59851.2 |
| cys-trna(pro) deacylase | DWY53_03315 | Not Available | Negative | 830776 - 831261 | 17802.8 |
| excinuclease abc subunit uvra | DWY53_03320 | Not Available | Negative | 831276 - 834104 | 105933.0 |
| lysm peptidoglycan-binding domain-containing protein | DWY53_03325 | Not Available | Positive | 834259 - 836067 | 68546.0 |
| port family protein | DWY53_03330 | Not Available | Positive | 836067 - 836750 | 25699.9 |
| duf4293 family protein | DWY53_03335 | Not Available | Negative | 836834 - 837286 | 16883.5 |
| rna polymerase rpb6 | DWY53_03340 | Not Available | Negative | 837536 - 837871 | 12965.3 |
| outer membrane protein assembly factor bamd | DWY53_03345 | Not Available | Negative | 837888 - 838724 | 32450.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

