Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF25-30LB |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1558347 bp
Thymine Count
1558364 bp
Guanine Count
1138401 bp
Cytosine Count
1152170 bp
Genome Length
5408603 bp
Protein-coding Genes
4536 genes
Non-Coding Genes
107 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trar/dksa family transcriptional regulator | DWY53_03250 | Not Available | Negative | 813832 - 814212 | 14347.1 |
| isoleucine--trna ligase | DWY53_03255 | Not Available | Negative | 814236 - 817724 | 132206.0 |
| arac family transcriptional regulator | DWY53_03260 | Not Available | Negative | 817933 - 818766 | 32094.1 |
| peptidase | DWY53_03265 | Not Available | Negative | 819266 - 820084 | 29692.7 |
| bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | DWY53_03270 | Not Available | Negative | 820338 - 821012 | 23919.2 |
| sugar kinase | DWY53_03275 | Not Available | Negative | 821122 - 822144 | 37020.8 |
| laci family dna-binding transcriptional regulator | DWY53_03280 | Not Available | Positive | 822389 - 823462 | 41131.5 |
| altronate dehydratase | DWY53_03285 | Not Available | Positive | 823484 - 824974 | 54186.1 |
| na+/h+ antiporter nhac family protein | DWY53_03290 | Not Available | Positive | 825120 - 826424 | 46607.5 |
| duf4373 domain-containing protein | DWY53_03295 | Not Available | Negative | 826601 - 827431 | 31690.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

