Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF25-30LB |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1558347 bp
Thymine Count
1558364 bp
Guanine Count
1138401 bp
Cytosine Count
1152170 bp
Genome Length
5408603 bp
Protein-coding Genes
4536 genes
Non-Coding Genes
107 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| histidine-type phosphatase | DWY53_02980 | Not Available | Negative | 743252 - 744991 | 66735.8 |
| glycoside hydrolase family 92 protein | DWY53_02985 | Not Available | Negative | 744998 - 747277 | 86105.8 |
| glycoside hydrolase family 28 protein | DWY53_02990 | Not Available | Negative | 747280 - 748692 | 52144.0 |
| glycoside hydrolase family 92 protein | DWY53_02995 | Not Available | Negative | 748718 - 751051 | 88710.1 |
| ragb/susd family nutrient uptake outer membrane protein | DWY53_03005 | Not Available | Negative | 751958 - 753598 | 61732.4 |
| tonb-dependent receptor | DWY53_03010 | Not Available | Negative | 753619 - 756642 | 111915.0 |
| duf1624 domain-containing protein | DWY53_03015 | Not Available | Negative | 756718 - 757836 | 41642.0 |
| alpha-n-acetylglucosaminidase | DWY53_03020 | Not Available | Negative | 757844 - 760108 | 87240.9 |
| hybrid sensor histidine kinase/response regulator | DWY53_03025 | Not Available | Negative | 760191 - 764411 | 162680.0 |
| putative transporter | DWY53_03035 | Not Available | Positive | 765865 - 767553 | 60888.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

