Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF25-30LB |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1558347 bp
Thymine Count
1558364 bp
Guanine Count
1138401 bp
Cytosine Count
1152170 bp
Genome Length
5408603 bp
Protein-coding Genes
4536 genes
Non-Coding Genes
107 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DWY53_02930 | Not Available | Positive | 725394 - 725582 | 7149.88 |
| peroxiredoxin | DWY53_02935 | Not Available | Positive | 725850 - 726416 | 21111.1 |
| alkyl hydroperoxide reductase subunit f | DWY53_02940 | Not Available | Positive | 726429 - 727979 | 55958.4 |
| laci family transcriptional regulator | DWY53_02945 | Not Available | Positive | 728119 - 729141 | 38256.6 |
| xylanase | DWY53_02950 | Not Available | Negative | 729222 - 730787 | 59563.2 |
| beta-glycosidase | DWY53_02955 | Not Available | Negative | 730800 - 732398 | 59513.4 |
| ragb/susd family nutrient uptake outer membrane protein | DWY53_02960 | Not Available | Negative | 732515 - 734173 | 63057.9 |
| tonb-dependent receptor | DWY53_02965 | Not Available | Negative | 734191 - 737229 | 112371.0 |
| hypothetical protein | DWY53_02970 | Not Available | Negative | 737252 - 738751 | 56154.5 |
| hybrid sensor histidine kinase/response regulator | DWY53_02975 | Not Available | Positive | 738965 - 743005 | 153051.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

