Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF25-30LB
Accession NumberQRUD00000000.1
Gene Summary
Adenine Count
1558347 bp
Thymine Count
1558364 bp
Guanine Count
1138401 bp
Cytosine Count
1152170 bp
Genome Length
5408603 bp
Protein-coding Genes
4536 genes
Non-Coding Genes
107 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| duf4981 domain-containing protein | DWY53_00075 | Not Available | + | 11166 - 14426 | 124856.0 |
| tonb-dependent receptor | DWY53_00080 | Not Available | + | 14663 - 17725 | 113359.0 |
| ragb/susd family nutrient uptake outer membrane protein | DWY53_00085 | Not Available | + | 17737 - 19368 | 62055.7 |
| glycoside hydrolase | DWY53_00090 | Not Available | - | 19472 - 20374 | 35344.5 |
| hypothetical protein | DWY53_00095 | Not Available | + | 20685 - 22463 | 67374.1 |
| duf4976 domain-containing protein | DWY53_00100 | Not Available | + | 22468 - 24051 | 61502.4 |
| iron-containing alcohol dehydrogenase | DWY53_00105 | Not Available | + | 24076 - 25248 | 42801.6 |
| hybrid sensor histidine kinase/response regulator | DWY53_00110 | Not Available | + | 25513 - 29484 | 150380.0 |
| tonb-dependent receptor | DWY53_00115 | Not Available | + | 29617 - 32715 | 115063.0 |
| ragb/susd family nutrient uptake outer membrane protein | DWY53_00120 | Not Available | + | 32735 - 34771 | 78323.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
