Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF25-30LB |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1558347 bp
Thymine Count
1558364 bp
Guanine Count
1138401 bp
Cytosine Count
1152170 bp
Genome Length
5408603 bp
Protein-coding Genes
4536 genes
Non-Coding Genes
107 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| omph family outer membrane protein | DWY53_02830 | Not Available | Negative | 705121 - 705624 | 19260.2 |
| omph family outer membrane protein | DWY53_02835 | Not Available | Negative | 705682 - 706197 | 18967.6 |
| outer membrane protein assembly factor bama | DWY53_02840 | Not Available | Negative | 706218 - 708860 | 100747.0 |
| isoprenyl transferase | DWY53_02845 | Not Available | Negative | 708872 - 709603 | 28066.4 |
| hypothetical protein | DWY53_02850 | Not Available | Negative | 709637 - 711034 | 52324.1 |
| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase ribd | DWY53_02855 | Not Available | Negative | 711162 - 712214 | 39640.4 |
| peptide chain release factor n(5)-glutamine methyltransferase | DWY53_02860 | Not Available | Positive | 712259 - 713095 | 31868.4 |
| recx family transcriptional regulator | DWY53_02865 | Not Available | Positive | 713097 - 713582 | 18941.9 |
| comf family protein | DWY53_02870 | Not Available | Positive | 713563 - 714258 | 26096.9 |
| orotate phosphoribosyltransferase | DWY53_02875 | Not Available | Positive | 714358 - 714996 | 23412.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

