Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF25-30LB |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1558347 bp
Thymine Count
1558364 bp
Guanine Count
1138401 bp
Cytosine Count
1152170 bp
Genome Length
5408603 bp
Protein-coding Genes
4536 genes
Non-Coding Genes
107 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf4369 domain-containing protein | DWY53_02780 | Not Available | Negative | 694581 - 695648 | 40431.1 |
| tetratricopeptide repeat protein | DWY53_02785 | Not Available | Negative | 695802 - 697478 | 60893.8 |
| site-specific tyrosine recombinase xerd | DWY53_02790 | Not Available | Negative | 697620 - 698561 | 36180.1 |
| type ii 3-dehydroquinate dehydratase | DWY53_02795 | Not Available | Positive | 698628 - 699050 | 15666.9 |
| pyruvate kinase | DWY53_02800 | Not Available | Positive | 699083 - 700546 | 54241.6 |
| methyltransferase | DWY53_02805 | Not Available | Positive | 700562 - 701200 | 24383.5 |
| 30s ribosome-binding factor rbfa | DWY53_02810 | Not Available | Positive | 701274 - 701609 | 12972.9 |
| abc transporter permease | DWY53_02815 | Not Available | Positive | 701619 - 702857 | 45679.9 |
| pyridoxamine kinase | DWY53_02820 | Not Available | Negative | 703244 - 704116 | 32647.3 |
| glutamate racemase | DWY53_02825 | Not Available | Negative | 704173 - 705018 | 31392.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

