Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF25-30LB |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1558347 bp
Thymine Count
1558364 bp
Guanine Count
1138401 bp
Cytosine Count
1152170 bp
Genome Length
5408603 bp
Protein-coding Genes
4536 genes
Non-Coding Genes
107 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| licd family protein | DWY53_02675 | Not Available | Negative | 671998 - 672795 | 31729.4 |
| nad/nadp octopine/nopaline dehydrogenase | DWY53_02680 | Not Available | Negative | 672799 - 673899 | 41186.0 |
| aminotransferase class i/ii-fold pyridoxal phosphate-dependent enzyme | DWY53_02685 | Not Available | Negative | 673896 - 675701 | 70240.4 |
| glycosyl transferase | DWY53_02690 | Not Available | Positive | 675791 - 676621 | 31834.5 |
| acyltransferase | DWY53_02695 | Not Available | Negative | 676644 - 677669 | 39504.4 |
| lipopolysaccharide biosynthesis protein | DWY53_02700 | Not Available | Negative | 677669 - 679105 | 53599.5 |
| methionine--trna ligase | DWY53_02705 | Not Available | Negative | 679186 - 681228 | 77707.9 |
| recombinase family protein | DWY53_02715 | Not Available | Positive | 682439 - 684310 | 71134.1 |
| energy transducer tonb | DWY53_02720 | Not Available | Positive | 684816 - 685382 | 21137.1 |
| hypothetical protein | DWY53_02725 | Not Available | Positive | 685418 - 685885 | 18240.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

