Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF25-30LB |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1558347 bp
Thymine Count
1558364 bp
Guanine Count
1138401 bp
Cytosine Count
1152170 bp
Genome Length
5408603 bp
Protein-coding Genes
4536 genes
Non-Coding Genes
107 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| protein translocase subunit secdf | DWY53_02575 | Not Available | Positive | 647419 - 650406 | 109218.0 |
| sugar kinase | DWY53_02580 | Not Available | Negative | 650671 - 651735 | 38944.4 |
| nad-dependent epimerase/dehydratase family protein | DWY53_02585 | Not Available | Negative | 651883 - 652836 | 35269.3 |
| glycine c-acetyltransferase | DWY53_02590 | Not Available | Positive | 653007 - 654197 | 43568.4 |
| Trna-arg | Not Available | Not Available | Positive | 654265 - 654339 | Not Available |
| 2-oxoacid:acceptor oxidoreductase subunit alpha | DWY53_02600 | Not Available | Positive | 654750 - 656597 | 66247.6 |
| 2-oxoacid:ferredoxin oxidoreductase subunit beta | DWY53_02605 | Not Available | Positive | 656621 - 657625 | 36538.8 |
| uracil phosphoribosyltransferase | DWY53_02610 | Not Available | Negative | 657782 - 658441 | 24410.4 |
| phosphoenolpyruvate carboxykinase (atp) | DWY53_02615 | Not Available | Positive | 658702 - 660309 | 59092.1 |
| proton-conducting membrane transporter | DWY53_02620 | Not Available | Positive | 660415 - 661065 | 23978.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

