Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF25-30LB |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1558347 bp
Thymine Count
1558364 bp
Guanine Count
1138401 bp
Cytosine Count
1152170 bp
Genome Length
5408603 bp
Protein-coding Genes
4536 genes
Non-Coding Genes
107 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cytidine deaminase | DWY53_02520 | Not Available | Negative | 635600 - 636079 | 17760.2 |
| hypothetical protein | DWY53_02525 | Not Available | Positive | 636299 - 636622 | 11453.6 |
| duf4476 domain-containing protein | DWY53_02530 | Not Available | Negative | 636692 - 637303 | 22876.5 |
| duf4476 domain-containing protein | DWY53_02535 | Not Available | Negative | 637337 - 638008 | 25419.7 |
| duf4981 domain-containing protein | DWY53_02545 | Not Available | Negative | 638587 - 641916 | 125961.0 |
| hu family dna-binding protein | DWY53_02550 | Not Available | Negative | 642009 - 642281 | 9278.25 |
| rhomboid family intramembrane serine protease | DWY53_02555 | Not Available | Positive | 642492 - 643169 | 25387.6 |
| rhomboid family intramembrane serine protease | DWY53_02560 | Not Available | Positive | 643150 - 644043 | 33974.6 |
| endonuclease | DWY53_02565 | Not Available | Positive | 644047 - 645126 | 40277.9 |
| m3 family peptidase | DWY53_02570 | Not Available | Positive | 645153 - 647240 | 78974.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

