Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF25-30LB |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1558347 bp
Thymine Count
1558364 bp
Guanine Count
1138401 bp
Cytosine Count
1152170 bp
Genome Length
5408603 bp
Protein-coding Genes
4536 genes
Non-Coding Genes
107 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 3-methyl-2-oxobutanoate dehydrogenase subunit vorb | DWY53_02415 | Not Available | Negative | 610344 - 611426 | 39202.6 |
| 4fe-4s dicluster domain-containing protein | DWY53_02420 | Not Available | Negative | 611438 - 611668 | 8117.04 |
| tetratricopeptide repeat protein | DWY53_02425 | Not Available | Negative | 611679 - 611975 | 11531.6 |
| duf4468 domain-containing protein | DWY53_02430 | Not Available | Negative | 612340 - 613437 | 40450.4 |
| ribose 5-phosphate isomerase b | DWY53_02435 | Not Available | Negative | 613544 - 613978 | 15958.1 |
| transketolase | DWY53_02440 | Not Available | Negative | 613975 - 615987 | 72435.5 |
| atpase | DWY53_02445 | Not Available | Negative | 616122 - 617720 | 57759.1 |
| l-arabinose isomerase | DWY53_02450 | Not Available | Negative | 617823 - 619352 | 57229.3 |
| l-ribulose-5-phosphate 4-epimerase | DWY53_02455 | Not Available | Negative | 619392 - 620078 | 24994.8 |
| nudix hydrolase | DWY53_02460 | Not Available | Negative | 620149 - 620826 | 26233.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

