Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF25-30LB |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1558347 bp
Thymine Count
1558364 bp
Guanine Count
1138401 bp
Cytosine Count
1152170 bp
Genome Length
5408603 bp
Protein-coding Genes
4536 genes
Non-Coding Genes
107 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| alpha-1,3-galactosidase b | DWY53_02310 | Not Available | Positive | 589516 - 591333 | 68960.8 |
| acyltransferase | DWY53_02315 | Not Available | Negative | 591416 - 591973 | 21350.4 |
| hypothetical protein | DWY53_02320 | Not Available | Negative | 591984 - 592232 | 9206.38 |
| diphosphate--fructose-6-phosphate 1-phosphotransferase | DWY53_02325 | Not Available | Positive | 592383 - 594026 | 59907.0 |
| glycoside hydrolase family 25 protein | DWY53_02330 | Not Available | Positive | 594152 - 595018 | 33926.9 |
| yccf domain-containing protein | DWY53_02335 | Not Available | Positive | 595064 - 595432 | 13206.2 |
| 50s ribosomal protein l11 methyltransferase | DWY53_02340 | Not Available | Negative | 595653 - 596498 | 31686.8 |
| thioredoxin | DWY53_02345 | Not Available | Negative | 596509 - 596769 | 10400.5 |
| helicase | DWY53_02350 | Not Available | Negative | 597000 - 599090 | 81474.2 |
| dna-binding protein | DWY53_02360 | Not Available | Positive | 599495 - 600118 | 23853.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

