Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF25-30LB |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1558347 bp
Thymine Count
1558364 bp
Guanine Count
1138401 bp
Cytosine Count
1152170 bp
Genome Length
5408603 bp
Protein-coding Genes
4536 genes
Non-Coding Genes
107 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| indolepyruvate ferredoxin oxidoreductase | DWY53_02260 | Not Available | Positive | 574332 - 575948 | 58830.6 |
| indolepyruvate oxidoreductase subunit beta | DWY53_02265 | Not Available | Positive | 575945 - 576526 | 21245.8 |
| pyridoxal phosphate-dependent aminotransferase | DWY53_02270 | Not Available | Positive | 576531 - 577835 | 48688.4 |
| phenylacetate--coa ligase | DWY53_02275 | Not Available | Positive | 577930 - 579231 | 48582.5 |
| amino acid-binding protein | DWY53_02280 | Not Available | Positive | 579245 - 579661 | 15370.7 |
| hypothetical protein | DWY53_02285 | Not Available | Positive | 579897 - 581681 | 69421.1 |
| sodium-translocating pyrophosphatase | DWY53_02290 | Not Available | Negative | 581751 - 583955 | 77024.7 |
| ygiq family radical sam protein | DWY53_02295 | Not Available | Negative | 584218 - 586104 | 72051.8 |
| hypothetical protein | DWY53_02300 | Not Available | Negative | 586155 - 586472 | 12230.6 |
| xanthan lyase | DWY53_02305 | Not Available | Negative | 586563 - 589433 | 106966.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

