Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF25-30LB |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1558347 bp
Thymine Count
1558364 bp
Guanine Count
1138401 bp
Cytosine Count
1152170 bp
Genome Length
5408603 bp
Protein-coding Genes
4536 genes
Non-Coding Genes
107 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| atp-dependent clp protease atp-binding subunit | DWY53_24340 | Not Available | Negative | 5379374 - 5380333 | 35525.7 |
| site-specific integrase | DWY53_24345 | Not Available | Positive | 5380496 - 5381451 | 37262.0 |
| filament-a percursor | DWY53_24350 | Not Available | Negative | 5381608 - 5381862 | 9896.9 |
| hypothetical protein | DWY53_24355 | Not Available | Negative | 5381867 - 5382418 | 20781.6 |
| duf1896 family protein | DWY53_24360 | Not Available | Negative | 5382445 - 5382854 | 15992.6 |
| type ia dna topoisomerase | DWY53_24365 | Not Available | Negative | 5383130 - 5383426 | 10977.2 |
| hypothetical protein | DWY53_24370 | Not Available | Negative | 5383536 - 5383898 | 13994.2 |
| hypothetical protein | DWY53_24375 | Not Available | Negative | 5383998 - 5384285 | 11068.8 |
| hypothetical protein | DWY53_24380 | Not Available | Positive | 5384472 - 5385344 | 32761.8 |
| atp-dependent helicase | DWY53_24385 | Not Available | Negative | 5385361 - 5385608 | 9836.91 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

