Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF25-30LB |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1558347 bp
Thymine Count
1558364 bp
Guanine Count
1138401 bp
Cytosine Count
1152170 bp
Genome Length
5408603 bp
Protein-coding Genes
4536 genes
Non-Coding Genes
107 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| flagellar protein flgn | DWY53_24215 | Not Available | Positive | 5361091 - 5362478 | 53045.6 |
| duf3408 domain-containing protein | DWY53_24220 | Not Available | Positive | 5362479 - 5362670 | 7506.99 |
| duf3408 domain-containing protein | DWY53_24225 | Not Available | Positive | 5362690 - 5362932 | 9396.4 |
| conjugal transfer protein trad | DWY53_24230 | Not Available | Positive | 5362929 - 5363645 | 26701.7 |
| duf4134 domain-containing protein | DWY53_24235 | Not Available | Positive | 5363849 - 5364060 | 7316.02 |
| is1380 family transposase is613 | DWY53_24240 | Not Available | Negative | 5364232 - 5365518 | 49574.1 |
| hydrophobe/amphiphile efflux-1 family rnd transporter | DWY53_24250 | Not Available | Negative | 5366748 - 5367115 | 13055.7 |
| tetracycline resistance element regulator rtea | DWY53_24255 | Not Available | Positive | 5367116 - 5367209 | 3441.04 |
| sigma-54-dependent fis family transcriptional regulator | DWY53_24260 | Not Available | Positive | 5367202 - 5368524 | 49691.2 |
| dde transposase | DWY53_24270 | Not Available | Negative | 5369954 - 5370893 | 35812.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

