Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF25-30LB |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1558347 bp
Thymine Count
1558364 bp
Guanine Count
1138401 bp
Cytosine Count
1152170 bp
Genome Length
5408603 bp
Protein-coding Genes
4536 genes
Non-Coding Genes
107 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type vi secretion system needle protein hcp | DWY53_23915 | Not Available | Positive | 5321196 - 5321618 | 15879.0 |
| hypothetical protein | DWY53_23920 | Not Available | Positive | 5321632 - 5321867 | 8855.55 |
| hypothetical protein | DWY53_23925 | Not Available | Positive | 5321868 - 5322068 | 7822.45 |
| hypothetical protein | DWY53_23945 | Not Available | Negative | 5324037 - 5324204 | 6488.94 |
| duf4369 domain-containing protein | DWY53_23950 | Not Available | Positive | 5324323 - 5325471 | 42886.3 |
| transcription elongation factor grea | DWY53_23955 | Not Available | Positive | 5325672 - 5326136 | 16780.4 |
| hit family protein | DWY53_23960 | Not Available | Positive | 5326188 - 5326595 | 15016.2 |
| hypothetical protein | DWY53_23965 | Not Available | Negative | 5326664 - 5326848 | 6913.98 |
| hypothetical protein | DWY53_23975 | Not Available | Negative | 5327285 - 5327803 | 20965.4 |
| tail tape measure protein | DWY53_23980 | Not Available | Negative | 5327800 - 5328789 | 36056.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

