Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF25-30LB |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1558347 bp
Thymine Count
1558364 bp
Guanine Count
1138401 bp
Cytosine Count
1152170 bp
Genome Length
5408603 bp
Protein-coding Genes
4536 genes
Non-Coding Genes
107 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna-binding response regulator | DWY53_23625 | Not Available | Negative | 5267860 - 5268561 | 26500.3 |
| sensor histidine kinase | DWY53_23630 | Not Available | Negative | 5268586 - 5269971 | 53366.8 |
| carboxypeptidase regulatory-like domain-containing protein | DWY53_23635 | Not Available | Positive | 5270093 - 5270984 | 33282.7 |
| conjugative transposon protein tran | DWY53_23640 | Not Available | Negative | 5270985 - 5271904 | 34488.3 |
| conjugative transposon protein tram | DWY53_23645 | Not Available | Negative | 5271974 - 5273329 | 48966.9 |
| duf3989 domain-containing protein | DWY53_23650 | Not Available | Negative | 5273310 - 5273618 | 11797.5 |
| restriction endonuclease subunit s | DWY53_23660 | Not Available | Positive | 5274153 - 5274656 | 18604.5 |
| integrase | DWY53_23670 | Not Available | Positive | 5275133 - 5275936 | 31455.2 |
| duf3945 domain-containing protein | DWY53_23680 | Not Available | Positive | 5277261 - 5277642 | 14183.5 |
| type ia dna topoisomerase | DWY53_23685 | Not Available | Positive | 5277703 - 5279841 | 79166.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

