Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF25-30LB |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1558347 bp
Thymine Count
1558364 bp
Guanine Count
1138401 bp
Cytosine Count
1152170 bp
Genome Length
5408603 bp
Protein-coding Genes
4536 genes
Non-Coding Genes
107 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| conjugative transposon protein trak | DWY53_23120 | Not Available | Positive | 5181545 - 5182168 | 24016.7 |
| duf3989 domain-containing protein | DWY53_23125 | Not Available | Positive | 5182174 - 5182482 | 11766.5 |
| conjugative transposon protein tram | DWY53_23130 | Not Available | Positive | 5182463 - 5183818 | 49032.1 |
| conjugative transposon protein tran | DWY53_23135 | Not Available | Positive | 5183873 - 5184707 | 31271.5 |
| site-specific integrase | DWY53_23140 | Not Available | Positive | 5184708 - 5185304 | 22831.9 |
| hypothetical protein | DWY53_23145 | Not Available | Negative | 5185288 - 5185485 | 7660.12 |
| hypothetical protein | DWY53_23150 | Not Available | Positive | 5185752 - 5186369 | 23582.1 |
| peptidoglycan domain protein | DWY53_23155 | Not Available | Positive | 5186388 - 5186906 | 19665.7 |
| hypothetical protein | DWY53_23160 | Not Available | Positive | 5186896 - 5187426 | 19583.6 |
| xre family transcriptional regulator | DWY53_23165 | Not Available | Positive | 5187758 - 5187970 | 7868.72 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

