Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF25-30LB |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1558347 bp
Thymine Count
1558364 bp
Guanine Count
1138401 bp
Cytosine Count
1152170 bp
Genome Length
5408603 bp
Protein-coding Genes
4536 genes
Non-Coding Genes
107 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| metallophosphoesterase | DWY53_02060 | Not Available | Negative | 527477 - 528637 | 43681.4 |
| 5-methyltetrahydrofolate--homocysteine methyltransferase | DWY53_02065 | Not Available | Negative | 528652 - 529539 | 33463.9 |
| dihydroorotase | DWY53_02070 | Not Available | Negative | 529536 - 530876 | 49602.5 |
| polyprenol monophosphomannose synthase | DWY53_02075 | Not Available | Negative | 530873 - 531622 | 28446.6 |
| porin family protein | DWY53_02080 | Not Available | Negative | 531775 - 532401 | 23477.8 |
| duf4136 domain-containing protein | DWY53_02085 | Not Available | Negative | 532443 - 533081 | 24018.1 |
| copper homeostasis protein | DWY53_02090 | Not Available | Negative | 533205 - 533693 | 17145.3 |
| peptidase s41 | DWY53_02095 | Not Available | Negative | 533850 - 535247 | 52241.7 |
| bifunctional aspartate transaminase/aspartate 4-decarboxylase | DWY53_02100 | Not Available | Negative | 535396 - 537036 | 62633.3 |
| aspartate-alanine antiporter | DWY53_02105 | Not Available | Negative | 537056 - 538756 | 61072.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

