Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF25-30LB |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1558347 bp
Thymine Count
1558364 bp
Guanine Count
1138401 bp
Cytosine Count
1152170 bp
Genome Length
5408603 bp
Protein-coding Genes
4536 genes
Non-Coding Genes
107 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| group ii intron reverse transcriptase/maturase | DWY53_23015 | Not Available | Positive | 5162897 - 5164579 | 64513.9 |
| trag family conjugative transposon atpase | DWY53_23025 | Not Available | Positive | 5165904 - 5166132 | 8828.6 |
| txe/yoeb family addiction module toxin | DWY53_23030 | Not Available | Negative | 5166225 - 5166494 | 10710.0 |
| type ii toxin-antitoxin system phd/yefm family antitoxin | DWY53_23035 | Not Available | Negative | 5166487 - 5166753 | 10097.0 |
| replication initiation protein | DWY53_23040 | Not Available | Positive | 5167216 - 5168196 | 38983.3 |
| hypothetical protein | DWY53_23045 | Not Available | Positive | 5168227 - 5168415 | 6564.9 |
| hypothetical protein | DWY53_23050 | Not Available | Positive | 5168541 - 5169083 | 20467.5 |
| duf3795 domain-containing protein | DWY53_23055 | Not Available | Positive | 5169127 - 5169477 | 13199.2 |
| clindamycin resistance transfer factor btgb | DWY53_23060 | Not Available | Negative | 5169606 - 5170505 | 34801.8 |
| clindamycin resistance transfer factor btga | DWY53_23065 | Not Available | Negative | 5170502 - 5171104 | 22689.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

