Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF25-30LB |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1558347 bp
Thymine Count
1558364 bp
Guanine Count
1138401 bp
Cytosine Count
1152170 bp
Genome Length
5408603 bp
Protein-coding Genes
4536 genes
Non-Coding Genes
107 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type vi secretion system contractile sheath protein tssc | DWY53_22955 | Not Available | Negative | 5153774 - 5155141 | 51711.8 |
| hypothetical protein | DWY53_22960 | Not Available | Negative | 5155147 - 5155620 | 17421.3 |
| type iv secretion protein rhs | DWY53_22970 | Not Available | Negative | 5157092 - 5158900 | 65921.0 |
| type vi secretion system needle protein hcp | DWY53_22975 | Not Available | Negative | 5159018 - 5159416 | 15197.9 |
| duf3408 domain-containing protein | DWY53_22980 | Not Available | Positive | 5159442 - 5159633 | 7533.02 |
| duf3408 domain-containing protein | DWY53_22985 | Not Available | Positive | 5159653 - 5159895 | 9382.37 |
| conjugal transfer protein trad | DWY53_22990 | Not Available | Positive | 5159892 - 5160608 | 26560.2 |
| duf4134 domain-containing protein | DWY53_22995 | Not Available | Positive | 5160810 - 5161121 | 10672.1 |
| duf4133 domain-containing protein | DWY53_23000 | Not Available | Positive | 5161132 - 5161464 | 12616.7 |
| hypothetical protein | DWY53_23010 | Not Available | Positive | 5162670 - 5162888 | 8110.93 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

