Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF25-30LB |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1558347 bp
Thymine Count
1558364 bp
Guanine Count
1138401 bp
Cytosine Count
1152170 bp
Genome Length
5408603 bp
Protein-coding Genes
4536 genes
Non-Coding Genes
107 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| m13 family peptidase | DWY53_22755 | Not Available | Positive | 5114806 - 5116818 | 74962.0 |
| site-specific integrase | DWY53_22760 | Not Available | Negative | 5116996 - 5118114 | 43299.0 |
| holliday junction branch migration dna helicase ruvb | DWY53_22765 | Not Available | Positive | 5118241 - 5119269 | 38022.6 |
| lipopolysaccharide biosynthesis protein | DWY53_22770 | Not Available | Positive | 5119273 - 5120718 | 54344.9 |
| tigr00341 family protein | DWY53_22775 | Not Available | Positive | 5120721 - 5122085 | 50482.2 |
| s46 family peptidase | DWY53_22780 | Not Available | Positive | 5122090 - 5124216 | 80074.8 |
| integrase | DWY53_22785 | Not Available | Positive | 5124494 - 5125705 | 46289.9 |
| integrase | DWY53_22790 | Not Available | Positive | 5125702 - 5126649 | 36979.4 |
| recombinase xerc | DWY53_22795 | Not Available | Positive | 5126633 - 5127688 | 40440.9 |
| toll/interleukin-1 receptor domain-containing protein | DWY53_22800 | Not Available | Negative | 5127800 - 5128321 | 19845.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

