Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF25-30LB |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1558347 bp
Thymine Count
1558364 bp
Guanine Count
1138401 bp
Cytosine Count
1152170 bp
Genome Length
5408603 bp
Protein-coding Genes
4536 genes
Non-Coding Genes
107 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna topoisomerase (atp-hydrolyzing) subunit b | DWY53_22350 | Not Available | Positive | 5013300 - 5015264 | 72969.4 |
| 4-alpha-glucanotransferase | DWY53_22355 | Not Available | Positive | 5015592 - 5018270 | 104498.0 |
| mfs transporter | DWY53_22360 | Not Available | Positive | 5018344 - 5019699 | 49040.2 |
| 6-phosphofructokinase | DWY53_22370 | Not Available | Negative | 5023477 - 5024487 | 35787.3 |
| hypothetical protein | DWY53_22375 | Not Available | Positive | 5024635 - 5026140 | 57485.0 |
| hypothetical protein | DWY53_22380 | Not Available | Positive | 5026145 - 5028067 | 73369.4 |
| duf3108 domain-containing protein | DWY53_22385 | Not Available | Positive | 5028064 - 5028873 | 31356.0 |
| Tmrna,resume consensus sequence (at 89): tttatctggcaacgaaaa | Not Available | Not Available | Positive | 5029080 - 5029474 | Not Available |
| lactonase family protein | DWY53_22395 | Not Available | Positive | 5029615 - 5030781 | 42758.9 |
| mannose-6-phosphate isomerase | DWY53_22400 | Not Available | Negative | 5030873 - 5031844 | 36186.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

