Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF25-30LB |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1558347 bp
Thymine Count
1558364 bp
Guanine Count
1138401 bp
Cytosine Count
1152170 bp
Genome Length
5408603 bp
Protein-coding Genes
4536 genes
Non-Coding Genes
107 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| site-specific integrase | DWY53_22225 | Not Available | Negative | 4986780 - 4987997 | 47061.6 |
| site-specific integrase | DWY53_22230 | Not Available | Negative | 4988017 - 4989246 | 46912.1 |
| hypothetical protein | DWY53_22245 | Not Available | Positive | 4991094 - 4991579 | 18783.2 |
| n-acetylmuramoyl-l-alanine amidase | DWY53_22255 | Not Available | Positive | 4992959 - 4993537 | 22772.5 |
| hypothetical protein | DWY53_22260 | Not Available | Positive | 4993814 - 4994827 | 36492.7 |
| hypothetical protein | DWY53_22265 | Not Available | Positive | 4994829 - 4996085 | 47349.1 |
| type iv secretory system conjugative dna transfer family protein | DWY53_22275 | Not Available | Negative | 4996899 - 4999208 | 87462.1 |
| hypothetical protein | DWY53_22280 | Not Available | Negative | 4999233 - 4999706 | 17833.7 |
| conjugative transposon protein tran | DWY53_22285 | Not Available | Negative | 4999710 - 5000597 | 34152.9 |
| conjugative transposon protein tram | DWY53_22290 | Not Available | Negative | 5000648 - 5001859 | 45449.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

