Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF25-30LB |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1558347 bp
Thymine Count
1558364 bp
Guanine Count
1138401 bp
Cytosine Count
1152170 bp
Genome Length
5408603 bp
Protein-coding Genes
4536 genes
Non-Coding Genes
107 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 50s ribosomal protein l20 | DWY53_21060 | Not Available | Negative | 4750501 - 4750851 | 13181.3 |
| 50s ribosomal protein l35 | DWY53_21065 | Not Available | Negative | 4750963 - 4751160 | 7367.31 |
| translation initiation factor if-3 | DWY53_21070 | Not Available | Negative | 4751232 - 4751828 | 22643.4 |
| threonine--trna ligase | DWY53_21075 | Not Available | Negative | 4751944 - 4753884 | 74203.1 |
| tetratricopeptide repeat protein | DWY53_21080 | Not Available | Negative | 4753965 - 4755974 | 77336.4 |
| peptide deformylase | DWY53_21085 | Not Available | Negative | 4756047 - 4756601 | 21050.7 |
| holliday junction resolvase ruvx | DWY53_21090 | Not Available | Negative | 4756625 - 4757044 | 15859.5 |
| moba protein | DWY53_21095 | Not Available | Positive | 4757326 - 4757751 | 16812.4 |
| relaxase | DWY53_21100 | Not Available | Positive | 4757730 - 4758980 | 46952.2 |
| conjugal transfer protein trag | DWY53_21105 | Not Available | Positive | 4759013 - 4761022 | 76464.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

