Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF25-30LB
Accession NumberQRUD00000000.1
Gene Summary
Adenine Count
1558347 bp
Thymine Count
1558364 bp
Guanine Count
1138401 bp
Cytosine Count
1152170 bp
Genome Length
5408603 bp
Protein-coding Genes
4536 genes
Non-Coding Genes
107 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| 1_nc_021802: phage prohead protease protein | DWY53_11420 | Not Available | + | 2709219 - 2710268 | 39416.8 |
| Major capsid protein | DWY53_11425 | Not Available | + | 2710294 - 2711979 | 61837.2 |
| Attr | Not Available | Not Available | + | 2720626 - 2720638 | Not Available |
| 5s ribosomal rna | Not Available | Not Available | + | 267 - 375 | Not Available |
| dna-binding protein | DWY53_00005 | Not Available | - | 427 - 720 | 11612.9 |
| dna-binding protein | DWY53_00010 | Not Available | - | 695 - 994 | 11636.8 |
| dna-binding protein | DWY53_00015 | Not Available | + | 1316 - 1621 | 11779.3 |
| Ncrna_class:rnase_p_rna | Not Available | Not Available | + | 1666 - 2035 | Not Available |
| prtrc system thif family protein | DWY53_00020 | Not Available | - | 1676 - 2458 | 29439.7 |
| 5s ribosomal rna | Not Available | Not Available | + | 3004 - 3114 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
