Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF25-30LB |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1558347 bp
Thymine Count
1558364 bp
Guanine Count
1138401 bp
Cytosine Count
1152170 bp
Genome Length
5408603 bp
Protein-coding Genes
4536 genes
Non-Coding Genes
107 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rlua family pseudouridine synthase | DWY53_20315 | Not Available | Positive | 4603634 - 4604560 | 35718.2 |
| helicase | DWY53_20320 | Not Available | Positive | 4606093 - 4607343 | 48035.2 |
| butyrate kinase | DWY53_20325 | Not Available | Negative | 4607481 - 4608545 | 38284.3 |
| phosphate butyryltransferase | DWY53_20330 | Not Available | Negative | 4608644 - 4609552 | 33285.3 |
| gamma-glutamyl-gamma-aminobutyrate hydrolase family protein | DWY53_20335 | Not Available | Positive | 4609635 - 4611392 | 64868.1 |
| glutamine cyclotransferase | DWY53_20340 | Not Available | Positive | 4611461 - 4612465 | 37858.6 |
| sufe family protein | DWY53_20345 | Not Available | Positive | 4612477 - 4612905 | 16169.5 |
| tonb-dependent receptor | DWY53_20350 | Not Available | Negative | 4612941 - 4615013 | 79117.4 |
| sensor histidine kinase | DWY53_20355 | Not Available | Positive | 4615065 - 4616603 | 59598.5 |
| dna-binding response regulator | DWY53_20360 | Not Available | Positive | 4616608 - 4617291 | 26125.7 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

