Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF25-30LB |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1558347 bp
Thymine Count
1558364 bp
Guanine Count
1138401 bp
Cytosine Count
1152170 bp
Genome Length
5408603 bp
Protein-coding Genes
4536 genes
Non-Coding Genes
107 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lysm peptidoglycan-binding domain-containing protein | DWY53_19900 | Not Available | Negative | 4514756 - 4515646 | 33332.2 |
| nucleoside-diphosphate kinase | DWY53_19905 | Not Available | Negative | 4515669 - 4516133 | 17401.2 |
| atp-dependent dna helicase recg | DWY53_19910 | Not Available | Negative | 4516354 - 4518450 | 79759.0 |
| 2-c-methyl-d-erythritol 4-phosphate cytidylyltransferase | DWY53_19915 | Not Available | Negative | 4518452 - 4519111 | 24326.4 |
| dj-1 family protein | DWY53_19920 | Not Available | Negative | 4519108 - 4519659 | 19256.6 |
| tonb family protein | DWY53_19925 | Not Available | Negative | 4519663 - 4520556 | 31428.5 |
| biopolymer transporter exbd | DWY53_19930 | Not Available | Negative | 4520566 - 4520985 | 16032.8 |
| mota/tolq/exbb proton channel family protein | DWY53_19935 | Not Available | Negative | 4520992 - 4521705 | 25739.8 |
| pyridoxine 5'-phosphate synthase | DWY53_19940 | Not Available | Negative | 4521705 - 4522421 | 26433.6 |
| nad kinase | DWY53_19945 | Not Available | Positive | 4522540 - 4523412 | 32172.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

