Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF25-30LB |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1558347 bp
Thymine Count
1558364 bp
Guanine Count
1138401 bp
Cytosine Count
1152170 bp
Genome Length
5408603 bp
Protein-coding Genes
4536 genes
Non-Coding Genes
107 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cold shock domain-containing protein | DWY53_19625 | Not Available | Positive | 4455733 - 4456179 | 17045.4 |
| ribonuclease z | DWY53_19630 | Not Available | Positive | 4456250 - 4457179 | 35262.8 |
| rna polymerase sigma factor | DWY53_19635 | Not Available | Positive | 4457213 - 4457764 | 21656.9 |
| hypothetical protein | DWY53_19640 | Not Available | Positive | 4457809 - 4458186 | 14654.4 |
| hypothetical protein | DWY53_19645 | Not Available | Positive | 4458198 - 4458644 | 17649.5 |
| tonb-dependent receptor | DWY53_19650 | Not Available | Positive | 4458918 - 4462079 | 117805.0 |
| ragb/susd family nutrient uptake outer membrane protein | DWY53_19655 | Not Available | Positive | 4462103 - 4463833 | 65732.8 |
| dihydrofolate reductase | DWY53_19660 | Not Available | Positive | 4464076 - 4464570 | 18849.7 |
| asnc family transcriptional regulator | DWY53_19665 | Not Available | Negative | 4464574 - 4465050 | 17875.6 |
| peptidase m64 | DWY53_19670 | Not Available | Positive | 4465079 - 4466464 | 52143.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

