Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF25-30LB |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1558347 bp
Thymine Count
1558364 bp
Guanine Count
1138401 bp
Cytosine Count
1152170 bp
Genome Length
5408603 bp
Protein-coding Genes
4536 genes
Non-Coding Genes
107 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf4251 domain-containing protein | DWY53_19570 | Not Available | Positive | 4446034 - 4446588 | 20119.4 |
| duf4251 domain-containing protein | DWY53_19575 | Not Available | Positive | 4446822 - 4447379 | 20164.2 |
| duf4136 domain-containing protein | DWY53_19580 | Not Available | Positive | 4447405 - 4448037 | 24210.4 |
| porin family protein | DWY53_19585 | Not Available | Positive | 4448050 - 4448688 | 24663.5 |
| histidine kinase | DWY53_19590 | Not Available | Positive | 4448805 - 4449848 | 40167.1 |
| dna-binding response regulator | DWY53_19595 | Not Available | Positive | 4449841 - 4450626 | 30188.5 |
| atpase | DWY53_19600 | Not Available | Positive | 4450782 - 4451621 | 30757.1 |
| n-acetylmuramic acid 6-phosphate etherase | DWY53_19605 | Not Available | Positive | 4451618 - 4452454 | 30438.0 |
| simpl domain-containing protein | DWY53_19610 | Not Available | Positive | 4452458 - 4453159 | 26282.6 |
| 30s ribosomal protein s1 | DWY53_19620 | Not Available | Positive | 4453687 - 4455483 | 67091.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

