Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF25-30LB |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1558347 bp
Thymine Count
1558364 bp
Guanine Count
1138401 bp
Cytosine Count
1152170 bp
Genome Length
5408603 bp
Protein-coding Genes
4536 genes
Non-Coding Genes
107 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| d-alanine--d-alanine ligase | DWY53_19395 | Not Available | Positive | 4401633 - 4402607 | 36067.1 |
| acyltransferase | DWY53_19400 | Not Available | Positive | 4402636 - 4403793 | 44510.6 |
| hypothetical protein | DWY53_19405 | Not Available | Positive | 4403852 - 4404502 | 24878.8 |
| rhodanese-like domain-containing protein | DWY53_19410 | Not Available | Positive | 4404532 - 4404930 | 15066.1 |
| acetylornithine carbamoyltransferase | DWY53_19415 | Not Available | Negative | 4405344 - 4406309 | 36475.8 |
| glutamate-5-semialdehyde dehydrogenase | DWY53_19420 | Not Available | Negative | 4406329 - 4407582 | 45479.7 |
| glutamate 5-kinase | DWY53_19425 | Not Available | Negative | 4407620 - 4408702 | 39536.0 |
| cof-type had-iib family hydrolase | DWY53_19430 | Not Available | Positive | 4408861 - 4409643 | 28780.6 |
| glycoside hydrolase family 92 protein | DWY53_19435 | Not Available | Positive | 4409847 - 4412039 | 82154.1 |
| hypothetical protein | DWY53_19440 | Not Available | Negative | 4412432 - 4413079 | 24737.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

