Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF25-30LB |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1558347 bp
Thymine Count
1558364 bp
Guanine Count
1138401 bp
Cytosine Count
1152170 bp
Genome Length
5408603 bp
Protein-coding Genes
4536 genes
Non-Coding Genes
107 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 5-dehydro-4-deoxy-d-glucuronate isomerase | DWY53_19180 | Not Available | Positive | 4357672 - 4358628 | 35966.2 |
| mfs transporter | DWY53_19185 | Not Available | Positive | 4358849 - 4360324 | 54265.1 |
| dna helicase | DWY53_19190 | Not Available | Negative | 4360378 - 4363704 | 128311.0 |
| hypothetical protein | DWY53_19195 | Not Available | Negative | 4363726 - 4364466 | 27970.5 |
| duf4038 domain-containing protein | DWY53_19200 | Not Available | Negative | 4364563 - 4366026 | 55688.0 |
| arabinosidase | DWY53_19205 | Not Available | Negative | 4366096 - 4367100 | 38217.7 |
| aldehyde dehydrogenase | DWY53_19210 | Not Available | Negative | 4367286 - 4368722 | 52569.3 |
| helix-turn-helix domain-containing protein | DWY53_19215 | Not Available | Negative | 4368934 - 4371723 | 106096.0 |
| beta-xylosidase | DWY53_19220 | Not Available | Negative | 4371898 - 4372947 | 39996.4 |
| hypothetical protein | DWY53_19225 | Not Available | Negative | 4373166 - 4373387 | 8694.83 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

