Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF25-30LB |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1558347 bp
Thymine Count
1558364 bp
Guanine Count
1138401 bp
Cytosine Count
1152170 bp
Genome Length
5408603 bp
Protein-coding Genes
4536 genes
Non-Coding Genes
107 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| oligogalacturonide lyase | DWY53_18955 | Not Available | Positive | 4307173 - 4308498 | 49982.5 |
| duf4976 domain-containing protein | DWY53_18960 | Not Available | Positive | 4308512 - 4309906 | 51590.4 |
| glycoside hydrolase family 2 protein | DWY53_18965 | Not Available | Positive | 4309920 - 4312775 | 106508.0 |
| duf4982 domain-containing protein | DWY53_18970 | Not Available | Positive | 4312981 - 4315986 | 114693.0 |
| rhamnogalacturonan lyase | DWY53_18975 | Not Available | Positive | 4316111 - 4317937 | 66998.9 |
| rhamnogalacturonan acetylesterase | DWY53_18980 | Not Available | Positive | 4318172 - 4319728 | 57980.5 |
| hypothetical protein | DWY53_18985 | Not Available | Positive | 4319750 - 4323049 | 124963.0 |
| aaa family atpase | DWY53_18990 | Not Available | Negative | 4323187 - 4324737 | 60780.4 |
| transposase family protein | DWY53_19000 | Not Available | Positive | 4325816 - 4326043 | 8830.85 |
| tonb-dependent receptor | DWY53_19005 | Not Available | Positive | 4326466 - 4329201 | 103908.0 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

