Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF25-30LB |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1558347 bp
Thymine Count
1558364 bp
Guanine Count
1138401 bp
Cytosine Count
1152170 bp
Genome Length
5408603 bp
Protein-coding Genes
4536 genes
Non-Coding Genes
107 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nadph-dependent 7-cyano-7-deazaguanine reductase quef | DWY53_18850 | Not Available | Negative | 4279969 - 4280424 | 17765.2 |
| 7-cyano-7-deazaguanine synthase quec | DWY53_18855 | Not Available | Negative | 4280646 - 4281314 | 24735.8 |
| vut family protein | DWY53_18860 | Not Available | Negative | 4281435 - 4282121 | 25083.7 |
| ornithine--oxo-acid transaminase | DWY53_18865 | Not Available | Negative | 4282410 - 4283645 | 45621.9 |
| amidinotransferase | DWY53_18870 | Not Available | Negative | 4283660 - 4284571 | 34260.9 |
| amidinotransferase | DWY53_18875 | Not Available | Negative | 4284594 - 4285514 | 35540.8 |
| endonuclease iii | DWY53_18880 | Not Available | Positive | 4285632 - 4286276 | 24101.6 |
| mbl fold metallo-hydrolase | DWY53_18885 | Not Available | Negative | 4286271 - 4287047 | 29140.4 |
| udp-n-acetylmuramate dehydrogenase | DWY53_18890 | Not Available | Negative | 4287056 - 4288069 | 37603.1 |
| duf4348 domain-containing protein | DWY53_18895 | Not Available | Negative | 4288081 - 4288941 | 33536.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

