Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF25-30LB |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1558347 bp
Thymine Count
1558364 bp
Guanine Count
1138401 bp
Cytosine Count
1152170 bp
Genome Length
5408603 bp
Protein-coding Genes
4536 genes
Non-Coding Genes
107 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna primase | DWY53_01620 | Not Available | Negative | 430885 - 431856 | 37366.9 |
| helicase | DWY53_01630 | Not Available | Negative | 432107 - 433348 | 48382.9 |
| hypothetical protein | DWY53_01635 | Not Available | Negative | 433626 - 434009 | 14123.1 |
| site-specific integrase | DWY53_01640 | Not Available | Negative | 434022 - 435242 | 46568.8 |
| amidophosphoribosyltransferase | DWY53_01645 | Not Available | Positive | 435546 - 436952 | 51992.8 |
| peptidase t | DWY53_01650 | Not Available | Positive | 437060 - 438280 | 45287.2 |
| glycine cleavage system aminomethyltransferase gcvt | DWY53_01655 | Not Available | Positive | 438316 - 439401 | 39655.6 |
| sodium:proton antiporter | DWY53_01660 | Not Available | Positive | 439607 - 441874 | 84385.5 |
| hit family protein | DWY53_01665 | Not Available | Positive | 441899 - 442324 | 16359.5 |
| rna-binding s4 domain-containing protein | DWY53_01670 | Not Available | Negative | 442415 - 442843 | 16437.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

