Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF25-30LB |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1558347 bp
Thymine Count
1558364 bp
Guanine Count
1138401 bp
Cytosine Count
1152170 bp
Genome Length
5408603 bp
Protein-coding Genes
4536 genes
Non-Coding Genes
107 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf4494 domain-containing protein | DWY53_17865 | Not Available | Positive | 4078734 - 4079216 | 18209.6 |
| yggs family pyridoxal phosphate-dependent enzyme | DWY53_17870 | Not Available | Positive | 4079250 - 4079918 | 25398.4 |
| dihydroorotate dehydrogenase-like protein | DWY53_17875 | Not Available | Positive | 4079932 - 4080906 | 35625.3 |
| long-chain fatty acid--coa ligase | DWY53_17880 | Not Available | Positive | 4081083 - 4082741 | 62504.7 |
| hypothetical protein | DWY53_17885 | Not Available | Positive | 4082995 - 4084380 | 48513.0 |
| duf3943 domain-containing protein | DWY53_17890 | Not Available | Positive | 4084419 - 4085891 | 56314.4 |
| crp/fnr family transcriptional regulator | DWY53_17895 | Not Available | Negative | 4085888 - 4086466 | 22566.6 |
| tolc family protein | DWY53_17900 | Not Available | Positive | 4086609 - 4087151 | 19956.0 |
| glucosamine-fructose-6-phosphate aminotransferase | DWY53_17905 | Not Available | Positive | 4087373 - 4087714 | 13132.8 |
| sis domain-containing protein | DWY53_17910 | Not Available | Positive | 4087612 - 4088049 | 15882.5 |
Pathways
343 pathways
Health Effects
No health effects information available for this bacterium.

