Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF25-30LB |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1558347 bp
Thymine Count
1558364 bp
Guanine Count
1138401 bp
Cytosine Count
1152170 bp
Genome Length
5408603 bp
Protein-coding Genes
4536 genes
Non-Coding Genes
107 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aspartate kinase | DWY53_17815 | Not Available | Positive | 4068144 - 4069463 | 49296.1 |
| diaminopimelate decarboxylase | DWY53_17820 | Not Available | Positive | 4069571 - 4070731 | 42749.4 |
| hypothetical protein | DWY53_17825 | Not Available | Negative | 4070796 - 4071302 | 19772.7 |
| glycosyltransferase | DWY53_17830 | Not Available | Positive | 4071507 - 4072664 | 44788.3 |
| antibiotic biosynthesis monooxygenase | DWY53_17835 | Not Available | Positive | 4072713 - 4072988 | 10430.6 |
| duf340 domain-containing protein | DWY53_17840 | Not Available | Positive | 4073545 - 4073832 | 10298.2 |
| lysine exporter lyso family protein | DWY53_17845 | Not Available | Positive | 4073822 - 4074442 | 22075.5 |
| abc transporter permease | DWY53_17850 | Not Available | Negative | 4074789 - 4076033 | 46918.6 |
| pyridoxal phosphate-dependent aminotransferase | DWY53_17855 | Not Available | Negative | 4076035 - 4077237 | 44969.1 |
| fucose isomerase | DWY53_17860 | Not Available | Positive | 4077403 - 4078638 | 46189.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

