Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF25-30LB |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1558347 bp
Thymine Count
1558364 bp
Guanine Count
1138401 bp
Cytosine Count
1152170 bp
Genome Length
5408603 bp
Protein-coding Genes
4536 genes
Non-Coding Genes
107 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| collagenase-like protease | DWY53_17390 | Not Available | Positive | 3976949 - 3978778 | 69827.9 |
| zinc ribbon domain-containing protein | DWY53_17395 | Not Available | Positive | 3978765 - 3979727 | 36802.1 |
| tonb-dependent receptor | DWY53_17400 | Not Available | Negative | 3979967 - 3982393 | 92160.0 |
| luxr family transcriptional regulator | DWY53_17405 | Not Available | Negative | 3982563 - 3983183 | 23357.5 |
| fad-binding protein | DWY53_17410 | Not Available | Negative | 3983311 - 3984954 | 60702.7 |
| duf1847 domain-containing protein | DWY53_17415 | Not Available | Negative | 3984960 - 3985610 | 24388.4 |
| dna repair protein rada | DWY53_17420 | Not Available | Negative | 3985650 - 3987017 | 49904.5 |
| bifunctional aspartate kinase/homoserine dehydrogenase i | DWY53_17425 | Not Available | Positive | 3987545 - 3989977 | 88655.7 |
| cofactor-independent phosphoglycerate mutase | DWY53_17430 | Not Available | Positive | 3989982 - 3991193 | 44511.4 |
| threonine synthase | DWY53_17435 | Not Available | Positive | 3991284 - 3992585 | 47696.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

