Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF25-30LB |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1558347 bp
Thymine Count
1558364 bp
Guanine Count
1138401 bp
Cytosine Count
1152170 bp
Genome Length
5408603 bp
Protein-coding Genes
4536 genes
Non-Coding Genes
107 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| susc/raga family tonb-linked outer membrane protein | DWY53_17335 | Not Available | Positive | 3960479 - 3963730 | 121848.0 |
| starch-binding protein | DWY53_17340 | Not Available | Positive | 3963742 - 3965163 | 53335.2 |
| ahpc/tsa family protein | DWY53_17345 | Not Available | Positive | 3965182 - 3966363 | 43766.7 |
| hypothetical protein | DWY53_17350 | Not Available | Positive | 3966750 - 3967253 | 19121.3 |
| efflux rnd transporter periplasmic adaptor subunit | DWY53_17355 | Not Available | Positive | 3967348 - 3968607 | 45794.5 |
| acrb/acrd/acrf family protein | DWY53_17360 | Not Available | Positive | 3968619 - 3971702 | 112512.0 |
| tolc family protein | DWY53_17365 | Not Available | Positive | 3971713 - 3972882 | 43859.6 |
| nitroreductase family protein | DWY53_17370 | Not Available | Positive | 3972994 - 3973722 | 27942.3 |
| gfo/idh/moca family oxidoreductase | DWY53_17380 | Not Available | Negative | 3974090 - 3975652 | 58071.8 |
| homoserine o-succinyltransferase | DWY53_17385 | Not Available | Positive | 3976035 - 3976952 | 35746.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

