Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF25-30LB |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1558347 bp
Thymine Count
1558364 bp
Guanine Count
1138401 bp
Cytosine Count
1152170 bp
Genome Length
5408603 bp
Protein-coding Genes
4536 genes
Non-Coding Genes
107 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Trna-met | Not Available | Not Available | Positive | 3892926 - 3892999 | Not Available |
| Trna-met | Not Available | Not Available | Positive | 3893058 - 3893134 | Not Available |
| hypothetical protein | DWY53_16990 | Not Available | Positive | 3893338 - 3893724 | 15299.0 |
| yjgp/yjgq family permease | DWY53_16995 | Not Available | Positive | 3893808 - 3895706 | 72557.6 |
| bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/gtp cyclohydrolase ii | DWY53_17000 | Not Available | Positive | 3895709 - 3896923 | 44935.4 |
| pyridoxal phosphate-dependent aminotransferase | DWY53_17005 | Not Available | Positive | 3897048 - 3898241 | 43014.4 |
| 4fe-4s dicluster domain-containing protein | DWY53_17010 | Not Available | Negative | 3898420 - 3898587 | 5717.65 |
| beta-n-acetylglucosaminidase | DWY53_17015 | Not Available | Negative | 3898690 - 3901683 | 112146.0 |
| bifunctional metallophosphatase/5'-nucleotidase | DWY53_17020 | Not Available | Negative | 3901726 - 3902571 | 31438.4 |
| 5'-nucleotidase | DWY53_17025 | Not Available | Negative | 3902583 - 3903362 | 27854.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

