Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF25-30LB |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1558347 bp
Thymine Count
1558364 bp
Guanine Count
1138401 bp
Cytosine Count
1152170 bp
Genome Length
5408603 bp
Protein-coding Genes
4536 genes
Non-Coding Genes
107 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glutamate formimidoyltransferase | DWY53_16760 | Not Available | Negative | 3845888 - 3846790 | 33343.4 |
| formiminotransferase-cyclodeaminase | DWY53_16765 | Not Available | Negative | 3846738 - 3846851 | 4348.15 |
| urocanate hydratase | DWY53_16770 | Not Available | Negative | 3846873 - 3848870 | 74552.1 |
| hypothetical protein | DWY53_16775 | Not Available | Negative | 3849132 - 3849317 | 7383.37 |
| s-adenosylmethionine:trna ribosyltransferase-isomerase | DWY53_16780 | Not Available | Negative | 3849396 - 3850613 | 46274.2 |
| duf2027 domain-containing protein | DWY53_16785 | Not Available | Positive | 3850678 - 3851766 | 41126.5 |
| paai family thioesterase | DWY53_16790 | Not Available | Positive | 3851794 - 3852204 | 14751.8 |
| histidine decarboxylase | DWY53_16795 | Not Available | Negative | 3852284 - 3852892 | 22182.6 |
| acyl-coa dehydrogenase | DWY53_16800 | Not Available | Negative | 3853351 - 3855057 | 63864.0 |
| four helix bundle protein | DWY53_16805 | Not Available | Negative | 3855099 - 3855479 | 14337.4 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

